PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28601
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 86aa    MW: 9436.07 Da    PI: 10.479
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28601genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC86.43e-2722861982
                      NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82
                               h+lPlarikki+k   edvkmis  aP+++skace+fi elt rsw+ a + krrtl+k dia+a
  Tp57577_TGAC_v2_mRNA28601 22 HSLPLARIKKIMKNsSEDVKMISGVAPIVFSKACEIFIEELTRRSWIMAIDGKRRTLNKEDIASA 86
                               99**********96269*********************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.89E-241586IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.4E-291986IPR009072Histone-fold
PfamPF008083.2E-192386IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MRQAGAYSNL LCGGISGRTG PHSLPLARIK KIMKNSSEDV KMISGVAPIV FSKACEIFIE  60
ELTRRSWIMA IDGKRRTLNK EDIASA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C7e-23228640103HapE
4g92_C7e-23228640103HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361381e-103AC136138.30 Medicago truncatula clone mth2-8f9, complete sequence.
GenBankJQ9182981e-103JQ918298.1 Medicago truncatula nuclear transcription factor Y subunit C6 (NF-YC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541864.12e-52PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ8LCG73e-24NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
SwissprotQ9SMP04e-24NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A0B2RY752e-52A0A0B2RY75_GLYSO; Nuclear transcription factor Y subunit C-1
TrEMBLI1M3F62e-52I1M3F6_SOYBN; Uncharacterized protein
STRINGGLYMA13G35980.15e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-25nuclear factor Y, subunit C2